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Italics indicates new items

Status keywords

  • "Initial Update": Updated from release 1.0 manual
  • "Edited": Reviewed, content edited directly
  • "Comments": Reviewed and comments made for response/revision
  • "In-progress": Started reviewing, but not completed
  • "Approved": Version approved, no further comments, edits, or suggestions

Manual 1.1 Section

 

 

Status

Comments

 

 

Jon

Heather

Yoram

What is MAD?

Initial Update 6/15

 Approved

 

 

How do I install MAD#?

 Initial Update Including Heather's Comments 8/11

Approved

 

[JS] Will installation procedure be similar to release 1.0? 

[HS] Yes, but there might be some small differences. I'll ask Carlos to provide a .msi soon.

[HS] I uploaded some comments as an attachment

[HS] 8/11 installer is posted

How do I start a project?

Updated Screenshots 8/14

 Approved 8/19

 

 [JS] Remember to add back in "Next" and "All Topics" links

[HS] Comments attached

[HS] 8/14 Text approved, awaiting screenshots

How do I set the spatial domain?

Updated Screenshots 8/14

 Approved 8/19

 

 [HS] Comments attached

[HS] 8/14 Text approved, awaiting screenshots

How do I define variables?

Incorporated Heather's comments 8/7

 Approved

 

 [HS] Only comment: change PMWIN to modflow96

How do I input measurements?

 Incorporated Heather's comments 8/14

 Approved 8/19

 

 [HS] Comments attached

How do I define the structural model?

 Incorporated Heather's comments 8/14

 Edited and Approved 8/19

 

 [HS] Comments attached

How do I add anchors?

 Minor edits and screenshot update 8/14

 Approved

 

 

How do I provide prior distributions?

Updated screenshots 8/14

 Approved 8/19

 

 [HS] Comments attached

[HS] 8/14 new screen shots needed

How do I choose the data used for calculating likelihood?

 Initial Update 6/24

 Approved

 

 

How do I run the simulations?

Incorporated Heather's comments and updated screenshots 8/15

 Approved 8/19

 

 [HS] Comments attached

[JS] Not sure what "Configure Packages button" you mean?

[HS] 8/11 I attached a screen shot

How do I start post-processing?

 Initial Update including Heather's comments 8/8

 Approved

 

 [HS]  Update version number; add the compare results button and feature

How do I pick the data that the simulations will be compared to?

 Initial Update including Heather's comments 8/8

 Approved

 

 [HS] Update version number; there is an extra button for creating subsets now; new screenshot needed

How do I calculate the likelihood?

Waiting for confirmation 8/15

 Approved 8/19

 

 [HS] Update version number; names are automatically generated now, and we MAY have the custom likelihood option (waiting to hear from Carlos)

[HS] 8/14 Just need to confirm the likelihood option

How do I test for convergence?

Initial Update including Heather's comments 8/8

 Approved

 

 [HS] Update version number; new options for selecting which samples; new screenshot needed

How do I view the posterior?

Initial Update including Heather's comments 8/8

 Approved

 

 [HS] Update version number; tab rearranged; posterior window rearranged; new statistics option

References

 

 Approved

 

 

Appendix A: The use of polynomial coefficients in likelihood function inference for MAD

 

 Approved

 

 

Appendix B: Origin Convention

 

 Approved

 

 

Appendix C: Transformation Formulae

 

 Approved

 

 

Appendix D: MAD# on computers from outside the US

 Removed 8/11

 Comments

 

 [HS] Can remove, not longer an issue

Appendix D: Modflow 2005

 Initial Update 8/13  Approved    

Appendix E: HYDRUS-1D

 

 Approved

 

 

Appendix F: PMWIN

 Initial Update including Heather's Comments 8/13

 Approved

 

 [HS] Rename MODFLOW96; we can support 3D now; maybe mention recommended GUI PMWIN

Appendix G: The Likelihood Function Calculation

 Waiting for confirmation 8/15

 Approved 8/19

 

 [HS] MAY be different, need to talk to Carlos

 

Appendix H: Sampling from a simple prior distribution

 Incorporated Heather's Comments and added formulas and symbols 8/15

 Approved 8/19

 

 [HS] In the eigth paragraph, it refernces a page number in the original manual. Replace with a link to the prior tab's webpage

Appendix I: Tips for low cost MAD projects

 

 Approved

 

 

Appendix J: Including measurement error in non-parametric likelihood functions

 

 Approved

 

 

Appendix K: Working with measurement error in multivariate likelihood functions

 

 Approved

 

 

Appendix L: Running MAD# simulations on HTCondor

 Initial Update 8/13

 Edited and approved

 

 [HS] 8/14 I just adjusted the wording of one sentence, and italicized commands for emphasis

Appendix M: Setting up a simple HTCondor pool

 Skipped for now 8/13

 (Skip approved)

 

 [HS] If you don't have time, we can skip this one (we tell them the MAD# side of the story only).

Appendix N: Running MAD# with scripts (Hesse-Savoy Scheme)

 

 Comments

 

 [HS] Not for R1.1

Appendix M: MAD#’s Field Manager

 Incorporated Heather's comments and new screenshots 8/15

Minor revisions and new screenshots 8/18

Approved 8/19

 

 [HS] 8/14 comments attached

Glossary

 

 Approved

 

 

 

 

     

 

Last edited Aug 19, 2014 at 4:22 PM by frystacka, version 33

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